Pairwise fitting emdb-1390 on emdb-5295 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-5295 by gmfit(PID:4129875).





RANK[1] Corr.Coeff:0.618

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-5295)

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3D reconstruction of negatively stained PCSK9 in complex with a Fab [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.618
0.481
0.474
0.421
0.367
0.352
0.269
0.231
0.227
0.203







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5295.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.761658,0.508888,-0.401135 28.450623 center 0,0,0 model #1
move 125.026237,109.673725,120.398726 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!