Pairwise fitting emdb-1386 on pdb-3mfp by gmfit



Pairwise fitting of target emdb-1386 on reference pdb-3mfp by gmfit(PID:1380692).

RANK[1] Corr.Coeff:0.453 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(pdb-3mfp)
display:
color:
b'ATOMIC MODEL OF F-ACTIN BASED ON A 6.6 ANGSTROM RESOLUTION CRYOEM MAP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.453 0.450 0.436 0.426 0.409 0.409 0.312 0.306 0.294 0.291

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3mfp"(PDB-format) or "3mfp"(mmCIF-format), and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.651760,0.118976,-0.749036 157.217653 center 0,0,0 model #1
    move -8.301167,12.153579,-51.224528 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!