Pairwise fitting emdb-1386 on pdb-3j5y by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3j5y by gmfit(PID:2533939).





RANK[1] Corr.Coeff:0.467

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3j5y)

display:



color:


b'STRUCTURE OF THE MAMMALIAN RIBOSOMAL PRE-TERMINATION COMPLEX          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.467
0.454
0.434
0.387
0.362
0.306
0.274
0.265
0.253
0.244







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j5y"(PDB-format) or 
 "3j5y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.562970,-0.545589,-0.620804 92.927484 center 0,0,0 model #1
move 245.318514,183.928992,264.732640 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!