Pairwise fitting emdb-1386 on pdb-3izy by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3izy by gmfit(PID:2297604).





RANK[1] Corr.Coeff:0.534

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3izy)

display:



color:


b'MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.534
0.483
0.453
0.448
0.255
0.216
0.140
0.124
0.117
0.117







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3izy"(PDB-format) or 
 "3izy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.883122,-0.348464,-0.314116 173.865619 center 0,0,0 model #1
move -23.655366,18.804670,-41.263325 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!