Pairwise fitting emdb-1386 on emdb-9555 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-9555 by gmfit(PID:3563276).





RANK[1] Corr.Coeff:0.553

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-9555)

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Single particle reconstruction of CNTNAP2: conformation #1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.553
0.481
0.448
0.435
0.164
0.150
0.138
0.137
0.136
0.098







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_9555.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.179567,0.964572,-0.193279 173.953100 center 0,0,0 model #1
move 50.073385,54.114637,56.643649 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!