Pairwise fitting emdb-1386 on emdb-9554 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-9554 by gmfit(PID:4007945).





RANK[1] Corr.Coeff:0.485

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-9554)

display:



color:


Single particle reconstruction of CNTNAP2: conformation #2 [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.485
0.455
0.448
0.446
0.378
0.191
0.166
0.158
0.128
0.122







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_9554.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.376562,-0.508971,-0.774048 46.542921 center 0,0,0 model #1
move 53.691170,45.836271,54.875686 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!