Pairwise fitting emdb-1386 on emdb-8348 by gmfit



Pairwise fitting of target emdb-1386 on reference emdb-8348 by gmfit(PID:4112646).

RANK[1] Corr.Coeff:0.506 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(emdb-8348)
display:
color:
Cryo-EM Structure of Yeast Pre-40S, Tsr1 region local class "T1" [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.506 0.449 0.421 0.410 0.375 0.301 0.231 0.230 0.222 0.216

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8348.map.gz", and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.857542,-0.460879,0.228501 112.519293 center 0,0,0 model #1
    move 198.944785,239.929559,198.685754 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8348)] [Download the target GMM(emdb 1386)] [Download gmfit result file(4112646)]