Pairwise fitting emdb-1386 on emdb-8348 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-8348 by gmfit(PID:4112646).





RANK[1] Corr.Coeff:0.506

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-8348)

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Cryo-EM Structure of Yeast Pre-40S, Tsr1 region local class "T1" [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.506
0.449
0.421
0.410
0.375
0.301
0.231
0.230
0.222
0.216







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8348.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.857542,-0.460879,0.228501 112.519293 center 0,0,0 model #1
move 198.944785,239.929559,198.685754 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8348)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4112646)]