Pairwise fitting emdb-1386 on emdb-5875 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-5875 by gmfit(PID:4090475).





RANK[1] Corr.Coeff:0.631

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-5875)

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Single-particle reconstruction of conformation XV of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.631
0.601
0.506
0.493
0.488
0.439
0.433
0.299
0.258
0.200







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5875.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.965739,0.138528,-0.219448 68.966453 center 0,0,0 model #1
move 29.314653,-18.192772,19.572886 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5875)]

[Download the target GMM(emdb 1386)]

[Download gmfit result file(4090475)]