Pairwise fitting emdb-1386 on emdb-5871 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-5871 by gmfit(PID:576776).





RANK[1] Corr.Coeff:0.608

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-5871)

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Single-particle reconstruction of conformation XI of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.608
0.589
0.499
0.495
0.488
0.456
0.234
0.201
0.174
0.170







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5871.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.996154,0.084580,0.022862 79.696227 center 0,0,0 model #1
move 17.162790,-22.921035,26.637800 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!