Pairwise fitting emdb-1386 on emdb-1773 by gmfit



Pairwise fitting of target emdb-1386 on reference emdb-1773 by gmfit(PID:1366303).

RANK[1] Corr.Coeff:0.544 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(emdb-1773)
display:
color:
Perforin monomer, conformation 2 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.544 0.495 0.472 0.445 0.359 0.221 0.201 0.180 0.178 0.153

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1773.map.gz", and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.474357,-0.815335,-0.331985 125.314700 center 0,0,0 model #1
    move 132.791005,128.800250,133.406368 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!