Pairwise fitting emdb-1384 on pdb-4ux2 by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4ux2 by gmfit(PID:484844).





RANK[1] Corr.Coeff:0.588

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4ux2)

display:



color:


b'CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.588
0.542
0.532
0.527
0.407
0.270
0.258
0.240
0.238
0.235







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4ux2"(PDB-format) or 
 "4ux2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.716994,0.482733,0.502880 126.244874 center 0,0,0 model #1
move 28.911546,35.757157,-42.715106 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!