Pairwise fitting emdb-1384 on pdb-3izy by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3izy by gmfit(PID:209194).





RANK[1] Corr.Coeff:0.536

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3izy)

display:



color:


b'MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.536
0.487
0.475
0.473
0.349
0.157
0.140
0.127
0.121
0.120







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3izy"(PDB-format) or 
 "3izy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.884083,-0.344113,-0.316200 174.205838 center 0,0,0 model #1
move -23.741877,18.916364,-41.379658 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!