Pairwise fitting emdb-1384 on pdb-2xzb by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-2xzb by gmfit(PID:4092943).





RANK[1] Corr.Coeff:0.592

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-2xzb)

display:



color:


b'PIG GASTRIC H,K-ATPASE WITH BOUND BEF AND SCH28080                    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.592
0.533
0.532
0.490
0.438
0.410
0.251
0.243
0.228
0.222







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xzb"(PDB-format) or 
 "2xzb"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.706966,0.490944,0.509090 124.112767 center 0,0,0 model #1
move 29.439154,36.379515,-43.063394 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!