Pairwise fitting emdb-1384 on emdb-1843 by gmfit



Pairwise fitting of target emdb-1384 on reference emdb-1843 by gmfit(PID:1351874).

RANK[1] Corr.Coeff:0.479 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(emdb-1843)
display:
color:
Structural basis for the subunit assembly of the anaphase promoting complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.479 0.419 0.362 0.344 0.292 0.270 0.267 0.255 0.240 0.227

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1843.map.gz", and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.564166,-0.157492,0.810501 102.746274 center 0,0,0 model #1
    move 66.018587,-18.535652,17.330958 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!