Pairwise fitting emdb-1384 on emdb-1236 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-1236 by gmfit(PID:1406906).





RANK[1] Corr.Coeff:0.361

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-1236)

display:



color:


Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.361
0.335
0.294
0.283
0.281
0.277
0.233
0.219
0.200
0.191







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1236.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.456244,0.738081,0.497069 159.312155 center 0,0,0 model #1
move 0.140032,0.764772,-1.181311 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!