Pairwise fitting emdb-1384 on emdb-1104 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-1104 by gmfit(PID:3619771).





RANK[1] Corr.Coeff:0.562

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-1104)

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Global conformational rearrangements during the activation of the GDP/GTP exchange factor Vav3. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.562
0.485
0.480
0.456
0.415
0.306
0.291
0.287
0.279
0.248







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1104.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.807348,-0.382383,0.449413 105.393307 center 0,0,0 model #1
move 17.035271,14.645476,12.182909 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!