Pairwise fitting emdb-1369 on pdb-5v7q by gmfit



Pairwise fitting of target emdb-1369 on reference pdb-5v7q by gmfit(PID:4091099).

RANK[1] Corr.Coeff:0.922 [JSmol] [Molmil]
TARGET(emdb-1369)
display:
color:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1369)]
REFERENCE(pdb-5v7q)
display:
color:
b'CRYO-EM STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM MYCOBACTERIUM ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.922 0.796 0.781 0.755 0.746 0.743 0.739 0.730 0.730 0.726

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5v7q"(PDB-format) or "5v7q"(mmCIF-format), and read it.
  2. Download the Target map "emd_1369.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.577635,-0.815687,0.031494 172.750704 center 0,0,0 model #1
    move 125.849946,159.595474,157.668947 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5v7q)] [Download the target GMM(emdb 1369)] [Download gmfit result file(4091099)]