Pairwise fitting emdb-1369 on pdb-5gah by gmfit










Pairwise fitting of target emdb-1369 on reference pdb-5gah by gmfit(PID:4111975).





RANK[1] Corr.Coeff:0.923

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1369)

display:



color:



Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1369)]







REFERENCE(pdb-5gah)

display:



color:


b'RNC IN COMPLEX WITH SRP WITH DETACHED NG DOMAIN                       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.923
0.809
0.762
0.761
0.758
0.757
0.755
0.742
0.728
0.725







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gah"(PDB-format) or 
 "5gah"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1369.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.018869,-0.073342,-0.997128 88.872404 center 0,0,0 model #1
move 210.848598,210.082948,211.433241 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!