Pairwise fitting emdb-1369 on pdb-5gag by gmfit










Pairwise fitting of target emdb-1369 on reference pdb-5gag by gmfit(PID:318103).





RANK[1] Corr.Coeff:0.917

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1369)

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Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1369)]







REFERENCE(pdb-5gag)

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b'RNC IN COMPLEX WITH SRP-SR IN THE CLOSED STATE                        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.917
0.796
0.767
0.765
0.752
0.752
0.739
0.721
0.720
0.714







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gag"(PDB-format) or 
 "5gag"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1369.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.007858,-0.073615,-0.997256 85.618160 center 0,0,0 model #1
move 205.063296,221.994590,221.986061 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!