Pairwise fitting emdb-1369 on pdb-3j3v by gmfit



Pairwise fitting of target emdb-1369 on reference pdb-3j3v by gmfit(PID:1468278).

RANK[1] Corr.Coeff:0.903 [JSmol] [Molmil]
TARGET(emdb-1369)
display:
color:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1369)]
REFERENCE(pdb-3j3v)
display:
color:
b'ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.903 0.743 0.718 0.714 0.712 0.707 0.707 0.700 0.695 0.689

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j3v"(PDB-format) or "3j3v"(mmCIF-format), and read it.
  2. Download the Target map "emd_1369.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.619808,-0.049496,-0.783191 81.261645 center 0,0,0 model #1
    move -4.003773,-12.566745,-22.770096 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!