Pairwise fitting emdb-1315 on pdb-5mdw by gmfit










Pairwise fitting of target emdb-1315 on reference pdb-5mdw by gmfit(PID:134022).





RANK[1] Corr.Coeff:0.797

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1315)

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color:



Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1315)]







REFERENCE(pdb-5mdw)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.797
0.757
0.744
0.738
0.734
0.716
0.715
0.706
0.692
0.688







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mdw"(PDB-format) or 
 "5mdw"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1315.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.726369,-0.208370,0.654959 144.367261 center 0,0,0 model #1
move 215.493354,211.133873,207.680745 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!