Pairwise fitting emdb-1315 on pdb-4v5h by gmfit



Pairwise fitting of target emdb-1315 on reference pdb-4v5h by gmfit(PID:4057612).

RANK[1] Corr.Coeff:0.805 [JSmol] [Molmil]
TARGET(emdb-1315)
display:
color:
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1315)]
REFERENCE(pdb-4v5h)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.805 0.771 0.750 0.711 0.710 0.707 0.689 0.688 0.682 0.675

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v5h"(PDB-format) or "4v5h"(mmCIF-format), and read it.
  2. Download the Target map "emd_1315.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.146202,-0.153595,-0.977258 176.211283 center 0,0,0 model #1
    move -1.744880,2.584341,-0.632218 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v5h)] [Download the target GMM(emdb 1315)] [Download gmfit result file(4057612)]