Pairwise fitting emdb-1311 on emdb-5977 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-5977 by gmfit(PID:4118788).





RANK[1] Corr.Coeff:0.877

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-5977)

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Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - 2 tRNA in non-rotated conformation) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.877
0.744
0.719
0.714
0.712
0.704
0.698
0.676
0.665
0.654







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5977.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.037115,-0.033058,0.998764 89.845702 center 0,0,0 model #1
move 192.898492,180.421239,188.144284 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5977)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(4118788)]