Pairwise fitting emdb-1311 on emdb-5234 by gmfit



Pairwise fitting of target emdb-1311 on reference emdb-5234 by gmfit(PID:1270445).

RANK[1] Corr.Coeff:0.775 [JSmol] [Molmil]
TARGET(emdb-1311)
display:
color:
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1311)]
REFERENCE(emdb-5234)
display:
color:
transfer-messenger RNA in complex with the ribosome in the resume state in E.coli cells [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.775 0.746 0.720 0.710 0.688 0.683 0.680 0.673 0.663 0.652

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5234.map.gz", and read it.
  2. Download the Target map "emd_1311.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.201747,0.124499,0.971493 174.780503 center 0,0,0 model #1
    move 3.104725,4.240534,-8.478011 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!