Pairwise fitting emdb-1311 on emdb-4129 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-4129 by gmfit(PID:4096829).





RANK[1] Corr.Coeff:0.860

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-4129)

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Structure of the mammalian ribosome with P- and E-site tRNAs and an unoccupied A site [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.860
0.733
0.726
0.714
0.707
0.705
0.689
0.674
0.669
0.666







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4129.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.029851,-0.964464,-0.262524 19.564520 center 0,0,0 model #1
move 274.487331,280.284113,271.794097 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!