Pairwise fitting emdb-1311 on emdb-3418 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-3418 by gmfit(PID:686811).





RANK[1] Corr.Coeff:0.718

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

display:



color:



Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-3418)

display:



color:


Subtomogram average of 80S ribosomes obtained using the VPP [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.718
0.712
0.701
0.682
0.663
0.661
0.648
0.639
0.634
0.623







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3418.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.579302,-0.434727,-0.689509 145.424338 center 0,0,0 model #1
move 200.469185,210.039044,221.663082 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!