Pairwise fitting emdb-1252 on pdb-5vhq by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-5vhq by gmfit(PID:4150898).

RANK[1] Corr.Coeff:0.573 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-5vhq)
display:
color:
b'CONFORMATIONAL LANDSCAPE OF THE P28-BOUND HUMAN PROTEASOME REGULATORY ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.573 0.511 0.463 0.457 0.455 0.443 0.443 0.419 0.397 0.363

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5vhq"(PDB-format) or "5vhq"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.855224,0.208902,-0.474291 178.017600 center 0,0,0 model #1
    move 161.976099,322.073912,436.744978 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5vhq)] [Download the target GMM(emdb 1252)] [Download gmfit result file(4150898)]