Pairwise fitting emdb-1252 on pdb-5oej by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-5oej by gmfit(PID:3989914).





RANK[1] Corr.Coeff:0.576

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-5oej)

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b'STRUCTURE OF TRA1 SUBUNIT WITHIN THE CHROMATIN MODIFYING COMPLEX SAGA ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.576
0.468
0.460
0.454
0.429
0.429
0.424
0.413
0.412
0.381







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5oej"(PDB-format) or 
 "5oej"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.629579,-0.058968,-0.774695 167.945530 center 0,0,0 model #1
move 373.289645,389.249193,273.673734 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!