Pairwise fitting emdb-1252 on pdb-5idf by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-5idf by gmfit(PID:3704495).





RANK[1] Corr.Coeff:0.690

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

display:



color:



Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-5idf)

display:



color:


b'CRYO-EM STRUCTURE OF GLUA2/3 AMPA RECEPTOR HETEROTETRAMER (MODEL II)  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.690
0.576
0.539
0.518
0.509
0.464
0.456
0.454
0.443
0.434







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5idf"(PDB-format) or 
 "5idf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.115542,0.375660,0.919527 103.777407 center 0,0,0 model #1
move 298.210986,-80.637811,37.446489 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!