Pairwise fitting emdb-1252 on emdb-3353 by gmfit










Pairwise fitting of target emdb-1252 on reference emdb-3353 by gmfit(PID:4043140).





RANK[1] Corr.Coeff:0.543

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(emdb-3353)

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Activation of NMDA receptors and the mechanism of inhibition by ifenprodil - Non-Active 1 Conformation [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.543
0.531
0.497
0.449
0.432
0.425
0.417
0.401
0.401
0.398







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3353.map.gz", and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.604936,0.649801,-0.460229 117.514818 center 0,0,0 model #1
move 8.285743,293.499515,382.282163 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!