Pairwise fitting emdb-1157 on pdb-5np7 by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-5np7 by gmfit(PID:2460302).





RANK[1] Corr.Coeff:0.684

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-5np7)

display:



color:


b'CRYOEM STRUCTURE OF HUMAN RAD51 ON SINGLE-STRANDED DNA TO 4.2A        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.684
0.646
0.636
0.630
0.558
0.543
0.542
0.539
0.415
0.369







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5np7"(PDB-format) or 
 "5np7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.712727,0.203415,0.671299 116.129023 center 0,0,0 model #1
move 257.406068,23.188562,264.746430 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!