Pairwise fitting emdb-1157 on pdb-5a8l by gmfit



Pairwise fitting of target emdb-1157 on reference pdb-5a8l by gmfit(PID:4098944).

RANK[1] Corr.Coeff:0.644 [JSmol] [Molmil]
TARGET(emdb-1157)
display:
color:
ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1157)]
REFERENCE(pdb-5a8l)
display:
color:
b'HUMAN ERF1 AND THE HCMV NASCENT PEPTIDE IN THE TRANSLATION TERMINATION' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.644 0.582 0.544 0.520 0.488 0.470 0.454 0.445 0.426 0.356

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5a8l"(PDB-format) or "5a8l"(mmCIF-format), and read it.
  2. Download the Target map "emd_1157.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.902655,-0.390084,-0.181794 50.925268 center 0,0,0 model #1
    move 125.934277,263.516059,4.751831 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5a8l)] [Download the target GMM(emdb 1157)] [Download gmfit result file(4098944)]