Pairwise fitting emdb-1157 on pdb-5a8l by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-5a8l by gmfit(PID:4098944).





RANK[1] Corr.Coeff:0.644

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-5a8l)

display:



color:


b'HUMAN ERF1 AND THE HCMV NASCENT PEPTIDE IN THE TRANSLATION TERMINATION' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.644
0.582
0.544
0.520
0.488
0.470
0.454
0.445
0.426
0.356







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a8l"(PDB-format) or 
 "5a8l"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.902655,-0.390084,-0.181794 50.925268 center 0,0,0 model #1
move 125.934277,263.516059,4.751831 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5a8l)]

[Download the target GMM(emdb 1157)]

[Download gmfit result file(4098944)]