Pairwise fitting emdb-1157 on pdb-3j0d by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-3j0d by gmfit(PID:3079090).





RANK[1] Corr.Coeff:0.538

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

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ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-3j0d)

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color:


b'MODELS FOR THE T. THERMOPHILUS RIBOSOME RECYCLING FACTOR BOUND TO THE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.538
0.505
0.456
0.432
0.420
0.402
0.387
0.376
0.317
0.283







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0d"(PDB-format) or 
 "3j0d"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.332961,0.825432,0.455851 116.911584 center 0,0,0 model #1
move 224.741446,25.459595,240.548208 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!