Pairwise fitting emdb-1090 on pdb-5no3 by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-5no3 by gmfit(PID:247874).





RANK[1] Corr.Coeff:0.658

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-5no3)

display:



color:


b'RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.658
0.571
0.557
0.523
0.522
0.501
0.479
0.468
0.392
0.382







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5no3"(PDB-format) or 
 "5no3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.431624,0.456398,-0.778075 171.038598 center 0,0,0 model #1
move 144.445422,187.265184,222.607959 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!