Pairwise fitting emdb-1090 on pdb-5lmq by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-5lmq by gmfit(PID:1609119).

RANK[1] Corr.Coeff:0.696 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-5lmq)
display:
color:
b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA-TRNA TRANSLATION PRE- ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.696 0.659 0.611 0.547 0.533 0.532 0.522 0.520 0.392 0.385

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5lmq"(PDB-format) or "5lmq"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.631070,0.678978,0.375153 157.445260 center 0,0,0 model #1
    move 196.477757,129.091621,146.702495 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!