Pairwise fitting emdb-1090 on pdb-2ykr by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-2ykr by gmfit(PID:1409123).

RANK[1] Corr.Coeff:0.673 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-2ykr)
display:
color:
b'30S RIBOSOMAL SUBUNIT WITH RSGA BOUND IN THE PRESENCE OF GMPPNP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.673 0.573 0.559 0.522 0.497 0.486 0.475 0.456 0.375 0.359

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2ykr"(PDB-format) or "2ykr"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.383153,0.167254,-0.908416 179.900761 center 0,0,0 model #1
    move -43.812469,31.444401,24.612574 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!