Pairwise fitting emdb-1022 on pdb-6bmf by gmfit










Pairwise fitting of target emdb-1022 on reference pdb-6bmf by gmfit(PID:4123520).





RANK[1] Corr.Coeff:0.728

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1022)

display:



color:



Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1022)]







REFERENCE(pdb-6bmf)

display:



color:


b'VPS4P-VTA1P COMPLEX WITH PEPTIDE BINDING TO THE CENTRAL PORE OF VPS4P ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.728
0.696
0.683
0.677
0.669
0.662
0.652
0.647
0.514
0.511







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "6bmf"(PDB-format) or 
 "6bmf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1022.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.677443,-0.399531,0.617613 133.674137 center 0,0,0 model #1
move 189.960708,236.388120,43.701907 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!