Pairwise fitting PDB-3vkg_A on EMD-2156 by gmfit



Pairwise fitting of target PDB-3vkg_A on reference EMD-2156 by gmfit(PID:32124).

RANK[1] Corr.Coeff:0.669 [JSmol] [Jmol_S] [Molmil]
TARGET(PDB-3vkg_A)
X-RAY STRUCTURE OF AN MTBD TRUNCATION MUTANT OF DYNEIN MOTOR DOMAIN [Ngauss:100]
[Download superimposed target atoms (PDB)(PDB-3vkg_A)]
REFERENCE(EMD-2156)
Cryo-EM structure of axonemal dynein-c in the ADP.Vi state [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.669 0.658 0.565 0.564 0.559 0.558 0.541 0.537 0.536 0.514

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2156.map.gz", and read it.
  2. Download the Target molecule "3vkg"(PDB-format) or "3vkg"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.602639,0.539292,-0.588210 155.828583 center 0,0,0 model #1
    move 237.079759,352.592200,399.132658 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!