Pairwise fitting PDB-1ob2 on PDB-1efg by gmfit










Pairwise fitting of target PDB-1ob2 on reference PDB-1efg by gmfit(PID:4123838).





RANK[1] Corr.Coeff:0.687

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(PDB-1ob2)

display:



color:



b'E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC         ' [Ngauss:20]

[Download superimposed target atoms (PDB)(PDB-1ob2)]







REFERENCE(PDB-1efg)

display:



color:


b'THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.687
0.579
0.513
0.512
0.489
0.477
0.461
0.457
0.440
0.416







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1efg"(PDB-format) or 
 "1efg"(mmCIF-format), and read it.

  2.  Download the Target molecule "1ob2"(PDB-format) or
  "1ob2"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.237835,-0.530457,-0.813664 103.076658 center 0,0,0 model #1
move 153.903872,123.934750,-85.741440 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1efg)]

[Download the target GMM(pdb 1ob2)]

[Download gmfit result file(4123838)]