Pairwise fitting PDB-1ob2 on PDB-1efg by gmfit



Pairwise fitting of target PDB-1ob2 on reference PDB-1efg by gmfit(PID:4123838).

RANK[1] Corr.Coeff:0.687 [JSmol] [Molmil]
TARGET(PDB-1ob2)
display:
color:
b'E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC ' [Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1ob2)]
REFERENCE(PDB-1efg)
display:
color:
b'THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.687 0.579 0.513 0.512 0.489 0.477 0.461 0.457 0.440 0.416

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1efg"(PDB-format) or "1efg"(mmCIF-format), and read it.
  2. Download the Target molecule "1ob2"(PDB-format) or "1ob2"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.237835,-0.530457,-0.813664 103.076658 center 0,0,0 model #1
    move 153.903872,123.934750,-85.741440 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 1efg)] [Download the target GMM(pdb 1ob2)] [Download gmfit result file(4123838)]