Pairwise fitting PDB-1ob2 on PDB-1efg by gmfit



Pairwise fitting of target PDB-1ob2 on reference PDB-1efg by gmfit(PID:5831).

RANK[1] Corr.Coeff:0.679 [JSmol] [Jmol_S] [Molmil]
TARGET(PDB-1ob2)
E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE [Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1ob2)]
REFERENCE(PDB-1efg)
THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.679 0.559 0.520 0.478 0.463 0.422 0.418 0.396 0.393 0.389

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1efg"(PDB-format) or "1efg"(mmCIF-format), and read it.
  2. Download the Target molecule "1ob2"(PDB-format) or "1ob2"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.125830,-0.600021,-0.790026 104.167769 center 0,0,0 model #1
    move 153.931287,92.249703,-99.066322 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!