Pairwise fitting PDB-1mmi on PDB-1vym by gmfit










Pairwise fitting of target PDB-1mmi on reference PDB-1vym by gmfit(PID:4159856).





RANK[1] Corr.Coeff:0.874

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(PDB-1mmi)

display:



color:



b'E. COLI DNA POLYMERASE BETA SUBUNIT                                   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(PDB-1mmi)]







REFERENCE(PDB-1vym)

display:



color:


b'NATIVE HUMAN PCNA                                                     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.874
0.848
0.816
0.814
0.786
0.780
0.697
0.664
0.456
0.366







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1vym"(PDB-format) or 
 "1vym"(mmCIF-format), and read it.

  2.  Download the Target molecule "1mmi"(PDB-format) or
  "1mmi"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.666249,-0.690012,-0.282834 156.098663 center 0,0,0 model #1
move 98.920126,54.886853,12.447520 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!