Pairwise fitting PDB-1mmi on PDB-1vym by gmfit



Pairwise fitting of target PDB-1mmi on reference PDB-1vym by gmfit(PID:5824).

RANK[1] Corr.Coeff:0.882 [JSmol] [Jmol_S] [Molmil]
TARGET(PDB-1mmi)
E. COLI DNA POLYMERASE BETA SUBUNIT [Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1mmi)]
REFERENCE(PDB-1vym)
NATIVE HUMAN PCNA [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.882 0.879 0.874 0.871 0.867 0.866 0.861 0.859 0.857 0.850

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1vym"(PDB-format) or "1vym"(mmCIF-format), and read it.
  2. Download the Target molecule "1mmi"(PDB-format) or "1mmi"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.741218,-0.658407,0.130752 114.699838 center 0,0,0 model #1
    move 65.364316,69.186998,-52.420758 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!