Pairwise fitting of target PDB-1mmi on reference PDB-1vym by gmfit.

Current [HTML5] Change to[JAVA] Corr.Coeff.bwn PDB-1mmi and PDB-1vym : 0.883
TARGET(PDB-1mmi)
E. COLI DNA POLYMERASE BETA SUBUNIT [Ngauss:20]
[Download superimposed target atoms (PDB)(PDB-1mmi)]
REFERENCE(PDB-1vym)
NATIVE HUMAN PCNA [Ngauss:20]
[Download the reference pdb]

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1vym"(PDB-format) or "1vym"(mmCIF-format), and read it.
  2. Download the Target molecule "1mmi"(PDB-format) or "1mmi"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.740476,-0.659467,0.129610 114.744685 center 0,0,0 model #1
    move 65.595759,69.059721,-52.289366 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!