Pairwise fitting PDB-3vkg_A on EMD-2156 by gmfit










Pairwise fitting of target PDB-3vkg_A on reference EMD-2156 by gmfit(PID:2530514).





RANK[1] Corr.Coeff:0.673

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(PDB-3vkg_A)

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b'X-RAY STRUCTURE OF AN MTBD TRUNCATION MUTANT OF DYNEIN MOTOR DOMAIN   ' [Ngauss:100]

[Download superimposed target atoms (PDB)(PDB-3vkg_A)]







REFERENCE(EMD-2156)

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Cryo-EM structure of axonemal dynein-c in the ADP.Vi state [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.673
0.664
0.663
0.572
0.572
0.558
0.550
0.544
0.544
0.542







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2156.map.gz", and read it.

  2.  Download the Target molecule "3vkg"(PDB-format) or
  "3vkg"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.604988,0.540248,-0.584911 155.971567 center 0,0,0 model #1
move 236.678636,351.488206,399.624839 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2156)]

[Download the target GMM(pdb 3vkg)]

[Download gmfit result file(2530514)]