Pairwise fitting emdb-5168 on pdb-3j0b by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-3j0b by gmfit(PID:4000243).





RANK[5] Corr.Coeff:0.407

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-3j0b)

display:



color:


b'CRYO-EM RECONSTRUCTION OF WEST NILE VIRUS                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.482
0.433
0.430
0.410
0.407
0.383
0.344
0.337
0.264
0.254







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0b"(PDB-format) or 
 "3j0b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.783008,0.275761,-0.557544 133.775343 center 0,0,0 model #1
move 21.469420,-25.936803,211.105204 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!