Pairwise fitting pdb-3dg5 on emdb-5265 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-5265 by gmfit(PID:2813918).





RANK[8] Corr.Coeff:0.661

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-5265)

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color:


Intermediate states observed in the pre-translocation ribosome during tRNA translocation [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.885
0.739
0.713
0.704
0.700
0.683
0.665
0.661
0.658
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5265.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.989945,0.138933,0.026566 174.816527 center 0,0,0 model #1
move -7.215955,3.126635,3.208604 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!