pairgmfit.cgi
 for superimposing target molecule on reference molecule using gmfit.
 this version does not depend on the data from EM navigator.
 coded by T.Kawabata. LastModified:2025/01/15

pairgmfit.cgi&idtar=[id for target]&idref=[id for target]
pairgmfit.cgi idtar=[id for target] idref=[id for target]

 idref     : id for the reference (EMDB-ID, PDB-ID, OMOKAGE_UPLOAD_ID, GMFIT_UPLOAD_ID)[]
 idtar     : id for the target    (EMDB-ID, PDB-ID, OMOKAGE_UPLOAD_ID, GMFIT_UPLOAD_ID)[]
   *examples for idref and idtar: 'pdb_1ob2', 'pdb_1ttt-3','emdb_2190', 'sas_model_39'
 calc      : 'T':calculate do gmfit superimpostion, 'F':read previously calculated gmfit file using PID.[T]
   NOTE: if 'PID' is given, 'calc' is enforced to be 'F'.[%s]
 fit       : 'T':use optimal fit 'F':not fit, use it as it is. [T]
 text      : only calculating similarity and output in plain text (T or F) [F]
 rank      : rank of superimposition [1]
 PID       : process ID []

 view      : 'JSmol':java-script-based, 'molmil':molmil, 'none':no molecular view [molmil]
 natomfull : maximum atom number for full atom. If over, enforce residue_select = 'T'.[100000]
 natomres  : maximum atom number for residue.   If over, don't show any atoms.        [500000]

 nrs    : number of repeat for local search [1000]