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GIRAF query upload
DB version: 2017-06-17: 619311 interfaces
- Similarity search for local protein structures at atomic resolution by exploiting a database management system.
Kinjo, A. R.; Nakamura, H. BIOPHYSICS 3:75-84 (2007) [for the description of the method]
- Comprehensive structural classification of ligand binding motifs in proteins.
Kinjo, A. R.; Nakamura, H. Structure 17:234-246 (2009) [for the identification of structural motifs]
- Geometric similarities of protein-protein interfaces at atomic resolution are only observed within homologous families: An exhaustive structural classification study.
Kinjo, A. R.; Nakamura, H. J. Mol. Biol 399:526-540 (2010) [application to protein-protein interfaces]
- GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution.
Kinjo, A. R.; Nakamura, H. BIOPHYSICS 8:79-94 (2012) [for the description of the improved method]
Protein Data Bank Japan 2010-04-30