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Yorodumi- PDB-6qbz: Solution structure of the N-terminal domain of the Staphylococcus... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6qbz | ||||||
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Title | Solution structure of the N-terminal domain of the Staphylococcus aureus Hibernation Promoting Factor | ||||||
Components | Ribosome hibernation promoting factor | ||||||
Keywords | RIBOSOMAL PROTEIN / Hibernation promoting factor / Staphylococcus aureus / 100S ribosome | ||||||
Function / homology | Function and homology information negative regulation of translational elongation / primary metabolic process / ribosomal small subunit binding / cytosolic small ribosomal subunit / regulation of translation / cytoplasm Similarity search - Function | ||||||
Biological species | Staphylococcus aureus (bacteria) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Usachev, K.S. / Validov, S.Z. / Khusainov, I.S. / Klochkov, V.V. / Aganov, A.V. / Yusupov, M.M. | ||||||
Funding support | Russian Federation, 1items
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Citation | Journal: J.Biomol.Nmr / Year: 2019 Title: Solution structure of the N-terminal domain of the Staphylococcus aureus hibernation promoting factor. Authors: Usachev, K.S. / Validov, S.Z. / Khusainov, I.S. / Varfolomeev, A.A. / Klochkov, V.V. / Aganov, A.V. / Yusupov, M.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6qbz.cif.gz | 358.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6qbz.ent.gz | 310 KB | Display | PDB format |
PDBx/mmJSON format | 6qbz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qb/6qbz ftp://data.pdbj.org/pub/pdb/validation_reports/qb/6qbz | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12930.717 Da / Num. of mol.: 1 / Fragment: N-terminal domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Staphylococcus aureus (bacteria) Gene: hpf, raiA, BN1321_170086, BTN44_08780, C0J46_03720, C7Q89_05535, CSC83_13900, CSC87_08515, CV021_09125, EP54_02760, EQ90_03750, ERS072840_01629, HMPREF3211_01097, NCTC10654_00858, NCTC11940_ ...Gene: hpf, raiA, BN1321_170086, BTN44_08780, C0J46_03720, C7Q89_05535, CSC83_13900, CSC87_08515, CV021_09125, EP54_02760, EQ90_03750, ERS072840_01629, HMPREF3211_01097, NCTC10654_00858, NCTC11940_00726, NCTC13131_00825, NCTC13196_00432, NCTC13812_00784, NCTC6133_00902, NCTC7878_03405, NCTC9944_00832, RK64_04495, SAMEA1466939_00154, SAMEA1469870_00863, SAMEA1531701_00565, SAMEA1708664_00330, SAMEA1708674_00592 Plasmid: pGS21A / Production host: Escherichia coli BL21(DE3) (bacteria) / Variant (production host): Star / References: UniProt: W8USK0, UniProt: Q2G055*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Details: PBS buffer (90%H2O+10%D2O) at pH 7.6 with 200 mM NH4Cl concentration Ionic strength: 200 mM / Label: conditions_1 / pH: 7.6 / Pressure: 1 atm / Temperature: 308 K |
-NMR measurement
NMR spectrometer | Type: Bruker AvanceIII / Manufacturer: Bruker / Model: AvanceIII / Field strength: 700 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 2 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 500 / Conformers submitted total number: 10 |