- PDB-6fjl: Structure of IbpS from Dickeya dadantii -
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Basic information
Entry
Database: PDB / ID: 6fjl
Title
Structure of IbpS from Dickeya dadantii
Components
ABC-type Fe3+ transport system, periplasmic component
Keywords
METAL BINDING PROTEIN / Substrate binding protein Bacterial effector venus fly-trap
Function / homology
Bacterial extracellular solute-binding protein / Bacterial extracellular solute-binding protein / ACETATE ION / ABC-type Fe3+ transport system, periplasmic component
Function and homology information
Biological species
Dickeya dadantii (bacteria)
Method
X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 1.70000035298 Å
Method to determine structure: SAD / Resolution: 1.70000035298→47.5465786313 Å / SU ML: 0.216352520644 / Cross valid method: THROUGHOUT / σ(F): 1.33259982426 / Phase error: 26.6192617955
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.205859044668
7358
5.0372419081 %
RANDOM
Rwork
0.174517748023
138714
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obs
0.17613569009
146072
99.4221384281 %
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Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parameters
Biso mean: 37.1333890265 Å2
Refinement step
Cycle: LAST / Resolution: 1.70000035298→47.5465786313 Å