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Yorodumi- PDB-5jjm: Crystal Structure of Homodimeric Androgen Receptor Ligand-Binding... -
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-Basic information
Entry | Database: PDB / ID: 5jjm | ||||||
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Title | Crystal Structure of Homodimeric Androgen Receptor Ligand-Binding Domain bound to DHT and LxxLL peptide | ||||||
Components |
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Keywords | TRANSCRIPTION / nuclear receptor / transcription factor / oxosteroid receptor / human androgen receptor | ||||||
Function / homology | Function and homology information E1 NEDD8-activating enzyme / NEDD8 activating enzyme activity / endomitotic cell cycle / male somatic sex determination / activation of prostate induction by androgen receptor signaling pathway / lateral sprouting involved in mammary gland duct morphogenesis / POU domain binding / negative regulation of integrin biosynthetic process / regulation of developmental growth / male genitalia morphogenesis ...E1 NEDD8-activating enzyme / NEDD8 activating enzyme activity / endomitotic cell cycle / male somatic sex determination / activation of prostate induction by androgen receptor signaling pathway / lateral sprouting involved in mammary gland duct morphogenesis / POU domain binding / negative regulation of integrin biosynthetic process / regulation of developmental growth / male genitalia morphogenesis / positive regulation of integrin biosynthetic process / tertiary branching involved in mammary gland duct morphogenesis / animal organ formation / androgen binding / Leydig cell differentiation / regulation of systemic arterial blood pressure / epithelial cell morphogenesis / prostate gland growth / NEDD8 transferase activity / epithelial cell differentiation involved in prostate gland development / positive regulation of epithelial cell proliferation involved in prostate gland development / prostate gland epithelium morphogenesis / intracellular receptor signaling pathway / cellular response to testosterone stimulus / protein neddylation / positive regulation of transcription by RNA polymerase III / RNA polymerase II general transcription initiation factor binding / positive regulation of insulin-like growth factor receptor signaling pathway / positive regulation of intracellular estrogen receptor signaling pathway / morphogenesis of an epithelial fold / cellular response to steroid hormone stimulus / seminiferous tubule development / single fertilization / androgen receptor signaling pathway / RUNX2 regulates osteoblast differentiation / mammary gland alveolus development / intracellular estrogen receptor signaling pathway / cellular response to estrogen stimulus / estrogen response element binding / regulation of protein localization to plasma membrane / intracellular steroid hormone receptor signaling pathway / positive regulation of phosphorylation / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / steroid binding / post-translational protein modification / insulin-like growth factor receptor signaling pathway / epithelial cell proliferation / NIK-->noncanonical NF-kB signaling / G protein-coupled receptor activity / Dectin-1 mediated noncanonical NF-kB signaling / negative regulation of extrinsic apoptotic signaling pathway / positive regulation of cell differentiation / protein modification process / multicellular organism growth / SUMOylation of intracellular receptors / Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 / transcription coactivator binding / beta-catenin binding / positive regulation of miRNA transcription / Nuclear Receptor transcription pathway / male gonad development / nuclear receptor activity / negative regulation of epithelial cell proliferation / MAPK cascade / Antigen processing: Ubiquitination & Proteasome degradation / cell-cell signaling / Neddylation / positive regulation of NF-kappaB transcription factor activity / ATPase binding / spermatogenesis / DNA-binding transcription activator activity, RNA polymerase II-specific / in utero embryonic development / RNA polymerase II-specific DNA-binding transcription factor binding / positive regulation of MAPK cascade / transcription by RNA polymerase II / molecular adaptor activity / transcription cis-regulatory region binding / regulation of cell cycle / DNA-binding transcription factor activity, RNA polymerase II-specific / Ub-specific processing proteases / nuclear speck / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / protein heterodimerization activity / negative regulation of cell population proliferation / signaling receptor binding / chromatin binding / positive regulation of cell population proliferation / chromatin / positive regulation of gene expression / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / enzyme binding / signal transduction / positive regulation of transcription by RNA polymerase II / protein-containing complex / proteolysis / zinc ion binding / nucleoplasm / ATP binding Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.15 Å | ||||||
Authors | Estebanez-Perpina, E. / Fuentes-Prior, P. | ||||||
Citation | Journal: Nat Commun / Year: 2017 Title: Structure of the homodimeric androgen receptor ligand-binding domain. Authors: Nadal, M. / Prekovic, S. / Gallastegui, N. / Helsen, C. / Abella, M. / Zielinska, K. / Gay, M. / Vilaseca, M. / Taules, M. / Houtsmuller, A.B. / van Royen, M.E. / Claessens, F. / Fuentes- ...Authors: Nadal, M. / Prekovic, S. / Gallastegui, N. / Helsen, C. / Abella, M. / Zielinska, K. / Gay, M. / Vilaseca, M. / Taules, M. / Houtsmuller, A.B. / van Royen, M.E. / Claessens, F. / Fuentes-Prior, P. / Estebanez-Perpina, E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5jjm.cif.gz | 447.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5jjm.ent.gz | 367.7 KB | Display | PDB format |
PDBx/mmJSON format | 5jjm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jj/5jjm ftp://data.pdbj.org/pub/pdb/validation_reports/jj/5jjm | HTTPS FTP |
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-Related structure data
Related structure data | 1t7tS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
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